Independent - accommodation in San Diego
More than just hotels
Apartments, cabins, holiday rentals and more, plus millions of reviews from Aussie & Kiwi travellers
Flexibility matters
24/7 support, so you can book with confidence
Unlock member prices with Mates Rates
You could save 10% or more on over 100,000 hotels right now.
Check hotel availability in San Diego
Featured San Diego Independent accommodation

Bay Club Hotel & Marina
2131 Shelter Island Dr San Diego CA
The price is AU$212 per night
AU$212
5 Jan - 6 Jan 2026
includes taxes & fees
Bay Club Hotel & Marina: Business-friendly hotel with free WiFi and an outdoor pool. Located in the suburbs.
Free cancellation
Reserve now, pay when you stay

Legacy Resort Hotel & Spa
875 Hotel Circle South San Diego CA
The price is AU$262 per night
AU$262
14 Dec - 15 Dec
includes taxes & fees
Legacy Resort Hotel & Spa: Business-friendly hotel with free WiFi and an outdoor pool. Located near the airport.
Free cancellation
Reserve now, pay when you stay

Lafayette Hotel & Club
2223 El Cajon Blvd San Diego CA
The price is AU$389 per night
AU$389
15 Dec - 16 Dec
includes taxes & fees
Lafayette Hotel & Club: Pet-friendly hotel with free WiFi and an outdoor pool. Located near the airport.
Free cancellation
Reserve now, pay when you stay

Margaritaville Hotel San Diego Gaslamp Quarter
435 6th Ave San Diego CA
The price is AU$334 per night
AU$334
24 Dec - 25 Dec
includes taxes & fees
Margaritaville Hotel San Diego Gaslamp Quarter: Pet-friendly hotel with an outdoor pool and a poolside bar. Located near a train station.
Pool
Pet-friendly
Free cancellation
Reserve now, pay when you stay

Heritage Inn San Diego
3333 Channel Way San Diego CA
The price is AU$103 per night
AU$103
25 Dec - 26 Dec
includes taxes & fees
Heritage Inn San Diego: Pet-friendly hotel with free WiFi and free parking. Located near theme parks.
Free cancellation
Reserve now, pay when you stay

Paradise Point Resort & Spa
1404 Vacation Rd San Diego CA
The price is AU$302 per night
AU$302
21 Dec - 22 Dec
includes taxes & fees
Paradise Point Resort & Spa: Family-friendly resort with free WiFi and 5 outdoor pools. Located by the ocean.
Free cancellation
Reserve now, pay when you stay

The Dana on Mission Bay
1710 W Mission Bay Dr San Diego CA
The price is AU$269 per night
AU$269
15 Dec - 16 Dec
includes taxes & fees
The Dana on Mission Bay: Pet-friendly hotel with 2 outdoor pools and a marina. Located on the waterfront.
Free cancellation
Reserve now, pay when you stay

The Atwood Hotel San Diego - SeaWorld/Zoo
1201 Hotel Circle South San Diego CA
The Atwood Hotel San Diego - SeaWorld/Zoo: Pet-friendly hotel with free WiFi and a bar/lounge. Located next to a golf course.
Free cancellation
Reserve now, pay when you stay

California Suites Hotel
5415 Clairemont Mesa Blvd San Diego CA
California Suites Hotel: Business-friendly hotel with free WiFi and free parking. Located by the ocean.
Pool
Hot tub
Free cancellation
Reserve now, pay when you stay

Bahia Resort Hotel
998 W Mission Bay Dr San Diego CA
The price is AU$304 per night
AU$304
11 Jan - 12 Jan 2026
includes taxes & fees
Bahia Resort Hotel: Pet-friendly resort with an outdoor pool and a bar/lounge. Located in the business district.
Free cancellation
Reserve now, pay when you stay
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Independent Accommodation in San Diego
Search for hotels in San Diego on Wotif. You can easily find your hotels in San Diego using one of the methods below:
- View our selection of featured hotels in San Diego
- Use the map to find hotels in the San Diego neighbourhood you prefer
- Use the filters to see hotels in a specific area of San Diego, select a specific theme, brand, or hotel class from basic to luxury hotels in San Diego
- Enter your travel dates to view the best deals on hotels in San Diego - while they last
New reviews! Best hotels in San Diego

Wotif Verified Review
5 / 5
Great hotel! Loved the location. Great service.
A verified traveller stayed at Bay Club Hotel & Marina
Posted 2 days ago
More Destinations
- Best Western Hotels in Julian
- Accor Hotels in San Clemente
- La Quinta Inn & Suites Hotels in San Clemente
- Ayres Collection Hotels in Ladera Ranch
- La Quinta Inn & Suites Hotels in Ladera Ranch
- Marriott Hotels & Resorts in Ladera Ranch
- Hilton Hotels in San Juan Capistrano
- Hilton Hotels in Borrego Springs
- Apartment Hotels in Little Italy
- Little Italy Hotels
- Marriott Hotels & Resorts in Wildomar
- La Quinta Inn & Suites Hotels in Murrieta
- Motel 6 Hotels in Murrieta
- Wyndham Hotels in Murrieta
- Middletown Hotels
- La Quinta Inn & Suites Hotels in Fallbrook
- Hotels near Petco Park
- Hyatt Hotels in Temecula
- East Village Hotels
- La Quinta Inn & Suites Hotels in El Cajon
- Hotels near USS Midway Museum
- Marriott Hotels & Resorts in Ramona
- All Inclusive Hotels in San Diego County
- Apartment Hotels in San Diego County
- Golf Hotels in San Diego County
- Hotels with a Waterpark in San Diego County
- Winery Hotels in San Diego County
- San Diego County Hotels
- Farmstay in San Diego County
- Cabin Rentals in San Diego County
- Caravan Parks in San Diego County
- Chalets in San Diego County
- Guest Houses in San Diego County
- Hostels in San Diego County
- Lodges in San Diego County
- Motels in San Diego County
- Hotels near San Diego Convention Center
- Hotels near San Diego Zoo
- Four Seasons Hotels in Carlsbad
- Beach Hotels in Hillcrest
- Golden Hill Hotels
- Ayres Collection Hotels in Rancho Santa Margarita
- La Quinta Inn & Suites Hotels in Rancho Santa Margarita
- Motel 6 Hotels in Rancho Santa Margarita
- Wyndham Hotels in Rancho Santa Margarita
- Extended Stay America Hotels in Catalina Island
- Hilton Hotels in Catalina Island
- Hyatt Hotels in Catalina Island
- Marriott Hotels & Resorts in Catalina Island
- Wyndham Hotels in Coronado Island
- South Park Hotels
- Fairmont Hotels in Laguna Niguel
- Hilton Hotels in Laguna Niguel
- La Quinta Inn & Suites Hotels in Laguna Niguel
- Hyatt Hotels in Cardiff-by-the-Sea
- Hyatt Hotels in Escondido
- Hotels with Balconies in Gaslamp Quarter
- Gaslamp Quarter Hotels
- La Quinta Inn & Suites Hotels in Otay Mesa
- Downtown San Diego Hotels
- Motel 6 Hotels in Spring Valley
- Hyatt Hotels in Dana Point
- Alaska Airlines Las Vegas (LAS) to San Diego (SAN) flights
- Alaska Airlines Santa Rosa (STS) to San Diego (SAN) flights
- Alaska Airlines Victoria (YYJ) to San Diego (SAN) flights
- American Airlines Charleston (CHS) to San Diego (SAN) flights
- American Airlines Dallas (DFW) to San Diego (SAN) flights
- American Airlines Columbus (CMH) to San Diego (SAN) flights
- American Airlines Phoenix (PHX) to San Diego (SAN) flights
- Delta Hartford (BDL) to San Diego (SAN) flights
- Delta Bloomington (BMI) to San Diego (SAN) flights
- Delta New York (JFK) to San Diego (SAN) flights
- Delta Boston (BOS) to San Diego (SAN) flights
- Delta Norfolk (ORF) to San Diego (SAN) flights
- Delta Portland (PDX) to San Diego (SAN) flights
- Delta Sacramento (SMF) to San Diego (SAN) flights
- Delta Amsterdam (AMS) to San Diego (SAN) flights
- Delta Seattle (SEA) to San Diego (SAN) flights
- Frontier Airlines Cincinnati (CVG) to San Diego (SAN) flights
- Frontier Airlines Dallas (DFW) to San Diego (SAN) flights
- Hawaiian Airlines Brisbane (BNE) to San Diego (SAN) flights
- Hawaiian Airlines Sydney (SYD) to San Diego (SAN) flights
- Jetblue Airways Orlando (MCO) to San Diego (SAN) flights
- Qantas Airways Sydney (SYD) to San Diego (SAN) flights
- United Eureka (ACV) to San Diego (SAN) flights
- United Seattle (SEA) to San Diego (SAN) flights
- Flights from Adelaide (ADL) to San Diego (SAN)
- Flights from Los Angeles (LAX) to San Diego (SAN)
- Flights from Melbourne (MEL) to San Diego (SAN)
- Flights from Sydney (SYD) to San Diego (SAN)
^Eligibility requirements and conditions apply.




