Best Airfare Deals to Nagasaki Prefecture

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Score Epic Nagasaki Prefecture Accommodation Deals

Cuore Nagasaki EkiMae

Cuore Nagasaki EkiMae

3 out of 5
7-3 Daikokumachi, Nagasaki Nagasaki Kyushu Island
The price is AU$61 per night from 7 June to 8 June
AU$61
7 June - 8 June
Stay at this hotel in Nagasaki. Enjoy free Wi-Fi, breakfast (surcharge) and in-room massages. Our guests praise the helpful staff and the clean rooms in their ...
8.6/10 Excellent! (1,002 reviews)
"Great room very close to Tokyo Station. Bathroom was very nice too."

Reviewed on 20 May 2026

Opens in a new windowCuore Nagasaki EkiMae
APA Hotel Nagasaki Dejima

APA Hotel Nagasaki Dejima

3 out of 5
8-17 Kabashima-machi Nagasaki Nagasaki-ken
The price is AU$72 per night from 24 May to 25 May
AU$72
24 May - 25 May
Stay at this hotel in Nagasaki. Enjoy free Wi-Fi, breakfast (surcharge) and a 24-hour front desk. Popular attractions Nagasaki Dejima and Dejima Museum are located ...
7.8/10 Good! (253 reviews)
"It's APA, so it was small, clean, and the staff is always helpful. Nothing extraordinary, but reliability good, especially for solo traveling. I believe there were 3 standard Japanese laundry machines with the built in dry function that doesn’t work too well on thicker cotton like pants. A couple ..."

Reviewed on 21 May 2026

Opens in a new windowAPA Hotel Nagasaki Dejima
Dormy Inn Nagasaki Shinchi Chinatown Hot Spring

Dormy Inn Nagasaki Shinchi Chinatown Hot Spring

3.5 out of 5
7-24 Douza-machi Nagasaki Nagasaki-ken
The price is AU$79 per night from 7 June to 8 June
AU$79
7 June - 8 June
Stay at this hotel in Nagasaki. Enjoy free Wi-Fi, breakfast (surcharge) and a sauna. Popular attractions Hamanomachi Arcade and Shianbashi Alley are located ...
8.8/10 Excellent! (1,000 reviews)
"Breakfast wast great room was just hot and hard to sleep"

Reviewed on 18 Apr 2026

Opens in a new windowDormy Inn Nagasaki Shinchi Chinatown Hot Spring
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S Peria Hotel Nagasaki

S Peria Hotel Nagasaki

3 out of 5
35-5 Goto-cho Nagasaki Nagasaki-ken
The price is AU$71 per night from 24 May to 25 May
AU$71
24 May - 25 May
Stay at this hotel in Nagasaki. Enjoy free Wi-Fi, parking (surcharge) and a 24-hour front desk. Our guests praise the helpful staff in their reviews. Popular ...
8.6/10 Excellent! (962 reviews)
"Nice location - situated between Chinatown and Nagasaki train station, close to a tram stop. A few decent local eats across the main street. Parking facilities were easy to use. Room was clean but small - not ideal if you have huge suitcases. Staff were excellent and really helpful."

Reviewed on 4 May 2026

Opens in a new windowS Peria Hotel Nagasaki
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Hotels With Airport Transportation

Hotel Resol Sasebo

Hotel Resol Sasebo

3 out of 5
8-17 Shirahae-cho Sasebo Nagasaki-ken
The price is AU$72 per night from 22 June to 23 June
AU$72
per night
22 June - 23 June
Stay at this hotel in Sasebo. Enjoy free Wi-Fi, breakfast (surcharge) and parking (surcharge). Popular attractions Arkas Sasebo and Sasebo Harbor are located ...
7.8/10 Good! (749 reviews)
"Very good location"

Reviewed on 14 Apr 2026

Opens in a new windowHotel Resol Sasebo
Nagasaki International Hotel

Nagasaki International Hotel

3.5 out of 5
Kako-machi 1-973-1 Omura Nagasaki-ken
Stay at this business-friendly hotel in Omura. Enjoy free Wi-Fi, free parking and 2 restaurants. Popular attractions Omura Bay and Former Entsuji Temple Garden ...
7.4/10 Good! (32 reviews)
"Expedia and their site says they have free airport shuttle...they do not. Someone needs to update now. Carpets were worn out in the halls. The service and friendlyness of the staff is what makes this hotel worth staying at. Also room was huge."

Reviewed on 26 Nov 2023

Opens in a new windowNagasaki International Hotel
Unzen Kanko Hotel

Unzen Kanko Hotel

3.5 out of 5
Unzen 320 Unzen Nagasaki-ken
Stay at this luxury hotel in Unzen. Enjoy free Wi-Fi, free parking and 2 restaurants. Popular attractions Vidoro Museum and Unzen Jigoku Hell are located ...
Opens in a new windowUnzen Kanko Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Family Friendly Hotels in

Hotel Okura JR Huis Ten Bosch

Hotel Okura JR Huis Ten Bosch

4 out of 5
10 Huis Ten Bosch cho Sasebo Nagasaki
The price is AU$142 per night from 3 June to 4 June
AU$142
3 June - 4 June
Stay at this hotel in Sasebo. Enjoy free Wi-Fi, 3 restaurants and hot springs on-site. Our guests praise the helpful staff and the clean rooms in their reviews. ...
9.2/10 Wonderful! (1,002 reviews)
"Clean room with nice view."

Reviewed on 6 May 2026

Opens in a new windowHotel Okura JR Huis Ten Bosch
Hotel Den Haag Huis Ten Bosch

Hotel Den Haag Huis Ten Bosch

4.5 out of 5
7-9 Huis Ten Bosch-cho Sasebo Nagasaki-ken
The price is AU$311 per night from 10 June to 11 June
AU$311
10 June - 11 June
Stay at this luxury hotel in Sasebo. Enjoy free Wi-Fi, breakfast (surcharge) and a free theme park shuttle. Our guests praise the helpful staff and the clean ...
Opens in a new windowHotel Den Haag Huis Ten Bosch
APA Hotel Nagasaki Dejima

APA Hotel Nagasaki Dejima

3 out of 5
8-17 Kabashima-machi Nagasaki Nagasaki-ken
The price is AU$72 per night from 24 May to 25 May
AU$72
24 May - 25 May
Stay at this hotel in Nagasaki. Enjoy free Wi-Fi, breakfast (surcharge) and a 24-hour front desk. Popular attractions Nagasaki Dejima and Dejima Museum are located ...
7.8/10 Good! (253 reviews)
"It's APA, so it was small, clean, and the staff is always helpful. Nothing extraordinary, but reliability good, especially for solo traveling. I believe there were 3 standard Japanese laundry machines with the built in dry function that doesn’t work too well on thicker cotton like pants. A couple ..."

Reviewed on 21 May 2026

Opens in a new windowAPA Hotel Nagasaki Dejima
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Hotel Bliss Villa Hasami

Hotel Bliss Villa Hasami

3 out of 5
567-1 Naganogo, Hasami-cho Hasami-cho Nagasaki
The price is AU$61 per night from 1 June to 2 June
AU$61
1 June - 2 June
Stay at this hotel in Hasami-cho. Enjoy free Wi-Fi, free parking and breakfast (surcharge). Popular attractions Huis Ten Bosch and Onigitanada are located ...
9.2/10 Wonderful! (257 reviews)
"The staff here are amazing, courteous, helpful and kind. The rooms are spotless. Amazing stay. Will stay here again when I’m the area."

Reviewed on 20 Nov 2025

Opens in a new windowHotel Bliss Villa Hasami
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

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Nagasaki Prefecture Flights

Hey traveller, when it’s time to hit the road you’ve got to go big, because you’re not going home…yet. When you book Nagasaki Prefecture flights through Wotif, you’re on the way to adventure. Whether this is a first-time or repeat visit, you’ll add tons of snaps to your photo album—and you just might discover some new favourite stomping grounds along the way! From whirlwind international tours to quiet escapes for a little R&R, you’ll find the best deals on airfares right here.

What is the lowest price on Wotif for a flight to Nagasaki Prefecture?
Flights to Nagasaki Prefecture start as low as . Once you’ve snagged your flight, it’s time to build that itinerary. If your flight touches down in a bustling city, you’ll want a head start, so you can get from jet-way to getaway as quickly as possible. Flying for business? Squeeze in some sightseeing and a snack at a locally loved restaurant between meetings—you’ll have plenty of cash thanks to our cheap business class flights to Nagasaki Prefecture. You know what they say about all work and no play, after all.

What are the most popular airlines that fly to Nagasaki Prefecture?


Pack your favourite magazines or stack your video queue for a mini-marathon of that television show your co-workers have been raving about. And if you get hooked a few episodes in, don’t worry; there’s always the return flight to finish the binge. Ready to book cheap flights to Nagasaki Prefecture? Check out our selection of airfares and start putting together a holiday that fits your schedule and price range. We offer sweet deals, so you don’t have to move mountains to see the world. In fact, we’ll help you get to those mountains (or ocean, or forest) today!